More blue eyes SNP rs12913832 allele frequencies

A comment on my post about rs12913832 pointed out that one can get allele frequencies for that SNP here, on the ALFRED site. I had visited the ALFRED site before, but had forgotten about it. It has allele frequencies for a lot more populations than those in the HGDP dataset.

Below I have presented the ALFRED data in the same way that I presented the HGDP data, with the populations in decreasing order of the frequency of the G allele associated with blue eyes. Some populations appear multiple times, because there are multiple samples for those populations.

In addition to the Karitiana, the Surui, and the Maya, the G allele is also present in the Muscogee, the Quechua, and the Cheyenne.

The Muscogee, also known as the Creek or Creeks, are originally from the Southeastern United States and are descendants of the mound builders of the Mississippian culture. The description for the ALFRED Muscogee sample says that “These people are, by their own report, not admixed with Europeans”.

The Quechua are the descendants of the Incas. The ALFRED Quechua sample “was collected with informed consent in Lima, Peru, from individuals who lived in the more remote Andes and were judged by a local anthropologist to be typical Quechuan speakers”.

The Cheyenne are originally from Minnesota, and are one of the Algonquian peoples. The Algonquian peoples have the highest frequency of the European mitochondrial haplogroup X2 in the Americas—up to 25%. The ALFRED Cheyenne sample is “from a number of small communities (population: 300-6000) in western Oklahoma”.

rs12913832-a-2

                       A     G
Swedes             0.042 0.958
Swiss              0.062 0.938
Russians           0.078 0.922
Estonian           0.096 0.904
Finns              0.097 0.903
Finns              0.111 0.889
Danes              0.130 0.870
Norwegian          0.136 0.864
British            0.140 0.860
Germans            0.150 0.850
Finns              0.152 0.848
Danes              0.158 0.842
Austrian           0.173 0.827
Russians           0.174 0.826
British            0.176 0.824
Dutch              0.180 0.820
Russians           0.180 0.820
Irish              0.193 0.807
Russians           0.200 0.800
Irish              0.204 0.796
Komi-Zyrian        0.205 0.795
European Americans 0.208 0.792
European Americans 0.208 0.792
Germans            0.214 0.786
Poles              0.220 0.780
European Americans 0.230 0.770
Europeans, Mixed   0.236 0.764
European Americans 0.239 0.761
Chuvash            0.256 0.744
Russians           0.260 0.740
Italians           0.310 0.690
Orcadian           0.310 0.690
Italians           0.320 0.680
Italians           0.333 0.667
Slovenes           0.338 0.662
Hungarian          0.341 0.659
French             0.375 0.625
French             0.380 0.620
Orcadian           0.380 0.620
French             0.390 0.610
Orcadian           0.393 0.607
Jews, Ashkenazi    0.430 0.570
Italians           0.440 0.560
Jews, Sephardic    0.442 0.558
Jews, Sephardic    0.463 0.537
Italians           0.474 0.526
French             0.478 0.522
Samaritans         0.513 0.487
Galician           0.531 0.469
Spaniards          0.539 0.461
Italians           0.554 0.446
Italians           0.560 0.440
Khanty             0.561 0.439
Italians           0.563 0.437
Greeks             0.566 0.434
Italians           0.571 0.429
Italians           0.576 0.424
Italians           0.577 0.423
Greeks             0.582 0.418
Italians           0.585 0.415
Italians           0.585 0.415
Adygei             0.600 0.400
Basque             0.600 0.400
Turks              0.602 0.398
Basque             0.604 0.396
Basque             0.630 0.370
Spaniards          0.631 0.369
Druze              0.635 0.365
Greeks             0.655 0.345
Greeks             0.656 0.344
Druze              0.660 0.340
Druze              0.679 0.321
Iberian            0.679 0.321
Adygei             0.680 0.320
Druze              0.680 0.320
Karitiana          0.692 0.308
Burusho            0.700 0.300
Burusho            0.700 0.300
Cambodians, Khmer  0.700 0.300
Adygei             0.710 0.290
Karitiana          0.710 0.290
Karitiana          0.710 0.290
Kalash             0.717 0.283
Kalash             0.720 0.280
Adygei             0.721 0.279
Colombian          0.725 0.275
Palestinian        0.742 0.258
Algerian           0.743 0.257
Karitiana          0.746 0.254
Palestinian        0.750 0.250
Andalusian         0.758 0.242
Hazara             0.760 0.240
Sardinian          0.765 0.235
Hispanic American  0.770 0.230
Hispanic American  0.770 0.230
Palestinian        0.770 0.230
Sardinian          0.771 0.229
Palestinian        0.783 0.217
Pashtun            0.783 0.217
Sindhi             0.783 0.217
Palestinian        0.790 0.210
Sardinian          0.790 0.210
Sindhi             0.790 0.210
Surui              0.790 0.210
Kazakh             0.798 0.202
Kazakh             0.798 0.202
Balochi            0.800 0.200
Pashtun            0.800 0.200
Puerto Rican       0.800 0.200
Sardinian          0.800 0.200
Sardinian          0.800 0.200
Surui              0.810 0.190
Moroccans          0.813 0.187
Surui              0.813 0.187
Balochi            0.820 0.180
Balochi            0.826 0.174
Pashtun            0.828 0.172
Mexican            0.833 0.167
Jews, Yemenite     0.838 0.162
Pashtun            0.838 0.162
African Americans  0.840 0.160
African Americans  0.840 0.160
African Americans  0.844 0.156
Surui              0.845 0.155
Berber             0.850 0.150
Thoti              0.857 0.143
Berber             0.860 0.140
African Americans  0.862 0.138
Indian, Mixed      0.870 0.130
African Americans  0.875 0.125
Negroid Makrani    0.875 0.125
Brahui             0.880 0.120
Burusho            0.880 0.120
Tunisian           0.880 0.120
Yakut              0.880 0.120
Thoti              0.885 0.115
Negroid Makrani    0.886 0.114
Bedouin            0.889 0.111
Balochi            0.900 0.100
Balochi            0.900 0.100
Bedouin            0.900 0.100
Kalash             0.900 0.100
Maya, Yucatan      0.900 0.100
Maya, Yucatan      0.900 0.100
Maya, Yucatan      0.900 0.100
Mozabite           0.900 0.100
Mozabite           0.900 0.100
Tujia              0.900 0.100
Uyghur             0.900 0.100
Uyghur             0.900 0.100
Moroccans          0.902 0.098
Mozabite           0.904 0.096
Andalusian         0.906 0.094
Gujarati           0.909 0.091
Gujarati           0.909 0.091
Balochi            0.910 0.090
Bedouin            0.910 0.090
Muscogee           0.910 0.090
Pashtun            0.910 0.090
Yakut              0.910 0.090
Hazara             0.911 0.089
Keralite           0.914 0.086
Mozabite           0.914 0.086
Hazara             0.915 0.085
Pashtun            0.925 0.075
Maya, Yucatan      0.929 0.071
Quechua            0.929 0.071
Libya              0.935 0.065
Libya              0.935 0.065
Sindhi             0.938 0.062
Sindhi             0.940 0.060
Khamba             0.941 0.059
Khamba             0.941 0.059
Cambodians, Khmer  0.944 0.056
Jews, Ethiopian    0.944 0.056
Mohanna            0.948 0.052
Mohanna            0.951 0.049
Hazara             0.952 0.048
Cheyenne           0.954 0.046
Uyghur             0.954 0.046
Uyghur             0.954 0.046
Mongolian          0.958 0.042
Mongolian          0.958 0.042
Yakut              0.958 0.042
Brahui             0.960 0.040
Brahui             0.960 0.040
Hazara             0.960 0.040
Yakut              0.960 0.040
Hmong              0.970 0.030
Hmong              0.970 0.030
Tsaatan            0.970 0.030
Masai              0.974 0.026
Cambodians, Khmer  0.978 0.022
Han                0.980 0.020
Mongolian          0.986 0.014
Zaramo             0.987 0.013
Han                0.995 0.005
Masai              0.997 0.003
Masai              0.997 0.003
Amerindians        1.000 0.000
Amerindians        1.000 0.000
Amerindians        1.000 0.000
Ami                1.000 0.000
Atayal             1.000 0.000
Baima Dee          1.000 0.000
Baima Dee          1.000 0.000
Bantu speakers     1.000 0.000
Bantu speakers     1.000 0.000
Bantu speakers     1.000 0.000
Bantu speakers     1.000 0.000
Bantu speakers     1.000 0.000
Biaka              1.000 0.000
Biaka              1.000 0.000
Biaka              1.000 0.000
Biaka              1.000 0.000
Cambodians, Khmer  1.000 0.000
Chagga             1.000 0.000
Dai                1.000 0.000
Dai                1.000 0.000
Dai                1.000 0.000
Daur               1.000 0.000
Daur               1.000 0.000
Daur               1.000 0.000
Guihiba            1.000 0.000
Guihiba            1.000 0.000
Hakka              1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Han                1.000 0.000
Hausa              1.000 0.000
Hezhe              1.000 0.000
Hezhe              1.000 0.000
Hezhe              1.000 0.000
Ibo                1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Japanese           1.000 0.000
Kachari            1.000 0.000
Kachari            1.000 0.000
Koreans            1.000 0.000
Koreans            1.000 0.000
Kuwaiti            1.000 0.000
Kuwaiti            1.000 0.000
Lahu               1.000 0.000
Lahu               1.000 0.000
Lahu               1.000 0.000
Lao Loum           1.000 0.000
Li                 1.000 0.000
Li                 1.000 0.000
Lisongo            1.000 0.000
Lisongo            1.000 0.000
Luhya              1.000 0.000
Luhya              1.000 0.000
Malaysians         1.000 0.000
Malaysians         1.000 0.000
Mandenka           1.000 0.000
Mandenka           1.000 0.000
Mandenka           1.000 0.000
Mbuti              1.000 0.000
Mbuti              1.000 0.000
Mbuti              1.000 0.000
Mbuti              1.000 0.000
Melanesian, Nasioi 1.000 0.000
Melanesian, Nasioi 1.000 0.000
Melanesian, Nasioi 1.000 0.000
Melanesian, Nasioi 1.000 0.000
Miao               1.000 0.000
Miao               1.000 0.000
Miao               1.000 0.000
Micronesians       1.000 0.000
Mongolian          1.000 0.000
Mongolian          1.000 0.000
Mongolian          1.000 0.000
Naxi               1.000 0.000
Naxi               1.000 0.000
Naxi               1.000 0.000
Oroqen             1.000 0.000
Oroqen             1.000 0.000
Oroqen             1.000 0.000
Papuan New Guinean 1.000 0.000
Papuan New Guinean 1.000 0.000
Papuan New Guinean 1.000 0.000
Papuan New Guinean 1.000 0.000
Papuan New Guinean 1.000 0.000
Pima, Arizona      1.000 0.000
Pima, Mexico       1.000 0.000
Pima, Mexico       1.000 0.000
Pima, Mexico       1.000 0.000
Pima, Mexico       1.000 0.000
Qiang              1.000 0.000
Qiang              1.000 0.000
Samoans            1.000 0.000
Samoans            1.000 0.000
San                1.000 0.000
San                1.000 0.000
San                1.000 0.000
Sandawe            1.000 0.000
She                1.000 0.000
She                1.000 0.000
She                1.000 0.000
Somali             1.000 0.000
Ticuna             1.000 0.000
Tu                 1.000 0.000
Tu                 1.000 0.000
Tu                 1.000 0.000
Tujia              1.000 0.000
Tujia              1.000 0.000
Uyghur             1.000 0.000
Vietnamese         1.000 0.000
Xibe               1.000 0.000
Xibe               1.000 0.000
Xibe               1.000 0.000
Yi                 1.000 0.000
Yi                 1.000 0.000
Yi                 1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
Yoruba             1.000 0.000
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