Y-SNP calls for Afontova Gora 2

Below are the Y-SNP calls for Afontova Gora 2. Positive calls are in bold, and negative calls are in non-bold.

The calls are consistent with the result that had at one time been disclosed by YFull that Afontova Gora 2 was Q1a1.

Note that the only sample that is currently listed in the YFull spreadsheet as being Q1a1 is a Punjabi sample from Lahore, Pakistan.

My analyses showed that Afontova Gora 2, like Mal’ta 1, had a large amount of the Gedrosia autosomal component, which peaks in populations of Pakistan, and which is also associated with R1b, but not with R1a.

A0-CTS2809/L991
A0-L1001
A0-T-L1123
A0-V223
A0-V233
A00-L1096
A00-L1103
A00-L1107
A00-L1134
A00-L1138
A0a1-V157
A0a1a-V161.1
A0b-L92.2
A1-L1005
A1-V161.2
A1a-V26
A1a-V57
A1b1a1-M23
A1b1b2b-M13/PF1374
B2a2a-P111
B2b1a2-P70
B2b1a2-P8_1
BT-L977
BT-M42
BT-PF1410/V235
BT-PF1412/V64
C-P260/P324
C1a1-M105
C1a1a1-Z7054
C1a1a1-Z7842
C1a1a2-Z7232
C1b1-K280
C1b1-K320
C1b1-K358
C1b1-K94
C1b1-K99
C1b1-Z12431
C1b1-Z12433
C1b1-Z12440
C1b1-Z12443
C1b1-Z12453
C1b1a-K175
C1b1a-K198
C1b1a-K303
C1b1a-K41
C1b1a1-K163
C1b1a1a-K338
C1b1a1a-K444
C1b1a1a-Z12509
C1b1a1a1a1-Z12522
C1b1a1a1a1a1-K470
C1b2-Z12318
C1b2-Z12321
C1b2-Z12338
C1b2-Z12353
C1b2-Z12356
C1b2-Z12360
C1b2-Z12369
C1b2-Z12387
C1b2-Z12392
C1b2-Z12422
C2b1-P39
C2e1-Z12153
C2e1b1-F3799
C2e2-CTS3958
C2e2-Z12273
C2e2a-K520
C2e2a-K525
C2e2a-Z12283
C2e2a-Z12285
C2e2a-Z12298
D-F3519
D1b-P190
D1b1a2b1-CTS1982/Z1498
D1b1a2b1-CTS4606/Z1499
D1b1a2b1a-CTS10268
D1b1a2b1a-Z14780
D1b1a2b1a-Z1500
D1b1d1-CTS2798
D1b1d1-CTS741
D1b1d1-Z1572
D1b1d1-Z1578
D1b1d1a-CTS2378/Z1548
D1b1d1a-CTS2482
D1b1d1a-CTS321/Z1528
D1b1d1a-CTS5307
D1b1d1a-CTS8230
D1b1d1a-CTS9335
D1b1d1a-Z14820
D1b1d1a-Z14829
D1b1d1a-Z14848
D1b1d1a-Z14851
D1b1d1a-Z14861
D1b1d1a-Z14863
D1b1d1a-Z1538
D1b1d1a-Z3856
D1b1d1a1-Z14811
D1b1d1a1-Z14812
D1b1d1b-CTS6511
D1b2-CTS3879
D1b2-CTS583/Z1516
D1b2-CTS8635
D1b2-Z14795
D1b2-Z14799
D1b2-Z1515
D1b2a-Z14786
D1b2a-Z14792
D1b2a-Z3814
E-CTS10894/M5552
E-CTS11216/M5556/PF1882
E-CTS1262/M5399/PF1522
E-CTS3337/PF1653
E-CTS6818/M5487
E-M5416/PF1552
E-M5417/PF1554
E-M5436/PF1583
E-M5549/PF1837
E-Z15673
E1a-CTS1059
E1a-CTS11276/Z960
E1a-CTS11444
E1a-CTS1235/Z903
E1a-CTS140
E1a-CTS2255
E1a-CTS3678
E1a-CTS3716
E1a-CTS4946
E1a-CTS5033
E1a-CTS5734
E1a-CTS6245
E1a-CTS6476
E1a-CTS6486
E1a-CTS7584
E1a-CTS8433
E1a-CTS8720
E1a-Z15443
E1a-Z15468
E1a-Z15472
E1a-Z15475
E1a-Z15476
E1a-Z15480
E1a-Z15495
E1a-Z15522
E1a-Z15555
E1a-Z898
E1a-Z900
E1a-Z910
E1a-Z917
E1a-Z966
E1a1-L634
E1a2-CTS10713/Z958
E1a2-CTS2223
E1a2-CTS2832
E1a2-CTS3515
E1a2-CTS3538
E1a2-CTS4276
E1a2-CTS5458
E1a2-CTS8133
E1a2-Z15108
E1a2-Z15113
E1a2-Z15128
E1a2-Z15135
E1a2-Z15143
E1a2-Z15155
E1a2-Z15157
E1a2-Z15166
E1a2-Z15169
E1a2-Z897
E1a2-Z952
E1a2a-CTS2632
E1a2a1a1-CTS5110/Z1890
E1a2a1a1-Z886
E1a2a1a1-Z892
E1a2a1a1a-Z15397
E1a2a1a1a-Z15398
E1a2a1a1a-Z15399
E1a2a1a2-Z15409
E1a2a1b-L133/Page74
E1a2a1b-Z15275
E1a2a1b1-CTS3615
E1a2a1b1-CTS9489/M1116
E1a2a1b1-Z15288
E1a2a1b1-Z15295
E1a2a1b1-Z15300
E1a2a1b1-Z15317
E1a2a1b1a-Z15327
E1a2a1b1a-Z15339
E1a2a1b1a-Z15343
E1a2a1b1a-Z15345
E1a2a1b1a-Z15380
E1a2a1b1a-Z15389
E1a2a2-Z15199
E1a2a2-Z15206
E1a2a2-Z15238
E1a2a2-Z15255
E1a2a2-Z15256
E1a2b1-Z15081
E1a2b1a1a1-Z14906
E1a2b1a1a1-Z14931
E1a2b1a1a1-Z14934
E1a2b1a1a1-Z14940
E1a2b1a1a1-Z14945
E1a2b1a1a1-Z14962
E1a2b1a1a1-Z14978
E1a2b1a2-Z14989
E1a2b1a2-Z14996
E1a2b1a2-Z15018
E1a2b1a2-Z15023
E1a2b1a2-Z15045
E1a2b1a2-Z15170
E1a2b1a2-Z5987
E1b1a1-CTS10066
E1b1a1-CTS10806/Z1135
E1b1a1-CTS7095
E1b1a1-CTS8443/TSC0769719
E1b1a1-Z1123
E1b1a1a1-CTS10659
E1b1a1a1-CTS12659
E1b1a1a1c1a-U186
E1b1a1a1c1b-L516
E1b1a1a1c2-CTS10560
E1b1a1a1c2-CTS5961
E1b1a1a1c2-Z15940
E1b1a1a1c2-Z15962
E1b1a1a1c2a-Z15985
E1b1a1a1c2b1-Z16019
E1b1a1a1c2b1-Z6006
E1b1a1a1c2b2-Z16048
E1b1a1a1c2c1-CTS10959
E1b1a1a1c2c1-CTS4907
E1b1a1a1c2c1a-CTS308
E1b1a1a1c2c1a-Z16077
E1b1a1a1c2c1a-Z17006
E1b1a1a1c2c2-Z17022
E1b1a1a1c2c2a-Z17029
E1b1a1a1c2c2a-Z17037
E1b1a1a1c2c2a-Z17046
E1b1a1a1c2c3a1-Z17051
E1b1a1a1c2c3a1-Z17057
E1b1a1a1c2c3a1-Z17060
E1b1a1a1c2c3a2a-Z16124
E1b1a1a1c2c3b1-Z16127
E1b1a1a1c2c3b1-Z16129
E1b1a1a1c2c3b1-Z16130
E1b1a1a1c2c3b1-Z16156
E1b1a1a1c2c3c-Z16165
E1b1a1a1c2c3c-Z16170
E1b1a1a1c2c3c-Z16172
E1b1a1a1c2c3c-Z16188
E1b1a1a1c2c3c-Z16190
E1b1a1a1c2c3c-Z16196
E1b1a1a1c2c3c-Z16208
E1b1a1a1d1b-P59
E1b1b1a1b1a6-L540
E1b1b1b1-L19/PF2345/V257
E1b1b1b2a1a-L29/Page47
E2-CTS10361/Z1024
E2-CTS2
E2-CTS309
E2-CTS472/Z996
E2-CTS5025
E2-CTS7458
E2-CTS9536
E2-Z15710
E2-Z15726
E2-Z15731
E2-Z15742
E2-Z15743
E2-Z15754
E2-Z15764
E2b-CTS11207
E2b-CTS7209
E2b-CTS7864
E2b-Z15787
E2b-Z15788
E2b-Z15795
E2b-Z15811
E2b-Z15817
E2b-Z15823
E2b-Z15829
E2b-Z15830
E2b-Z15831
E2b-Z15842
E2b-Z15864
E2b-Z15867
E2b-Z15876
E2b1a-CTS155/Z971
E2b1a-CTS2768/Z981
E2b1a-CTS6510/Z1017
E2b2-CTS10529
E2b2-Z15918
E2b2-Z15920
F-P159/PF2717
F-P160/PF2618
G-CTS5640/L1342/M3540
G-CTS6894/PF3003
G-CTS995/M3455
G-L836
G-M3482/PF2884
G-M3496/Z3229
G-M3497/Z3230
G-M3595/PF3065
G-M3604/PF3076/S7530
G-M3608/PF3092
G-M3619/PF3103
G-PF2805.1/Z2540.1
G-PF2808
G-PF2816
G-PF2920
G-Z3080
G-Z3248
G-Z6040
G-Z6318
G1b-L834
G2-CTS11016/M3615/PF3099
G2-CTS6742/PF2999
G2-M3465/PF2860
G2-M3585/PF3052
G2-PF2905
G2-Z3100
G2-Z3146
G2-Z6023
G2a-CTS11627/PF3110
G2a-CTS6630/M3340/PF2997
G2a-F4086/M3251/PF2863
G2a-M3410/PF3078
G2a1-L293
G2a1a1-Z6638
G2a1a1-Z6697
G2a1a1-Z8013
G2a1a1a-PF2826
G2a1a1a1-Z7943
G2a2a-PF3159
G2a2a1b1-Z6477
G2a2a1b1-Z6492
G2a2a1b1a-FGC5673
G2a2a1b1a-FGC5721
G2a2a1b1a-Z6209
G2a2a1b1a-Z6219
G2a2a1b1a-Z6499
G2a2b-L32/PF3266/S148/U8
G2a2b1a-L90/Page19/S133
G2a2b1b-L645
G2a2b2a1-PF3331
G2a2b2a1-PF3337/Z764
G2a2b2a1-Z6294
G2a2b2a1b1a2a1a-S23438
G2a2b2a1c1a1-FGC341
G2a2b2a1c1a1-Z6098
G2a2b2b-F3425/PF3431
G2a2b2b-PF3359
G2a2b2b-PF3375
G2a2b2b1a-F1079
G2a2b2b1a-F2020
G2a2b2b1a-F3282
G2a2b2b1a1-PF3349
G2a2b2b1a1-PF3423
G2b-M3115
H-M2773
H-Z13965
H-Z4166
H1a1-M2970/Z4393
H1a1b-M97
H1a1d1-Z14538
H1a1d1-Z14556
H1a1d1-Z14564
H1a1d1-Z14569
H1a1d1-Z14602
H1a1d1-Z14609
H1a1d1-Z14633
H1a1d1-Z14661
H1a1d2-M2772
H1a1d2-M2793/Z4372
H1a1d2-M2801
H1a1d2-M2884/Z4379
H1a1d2-M2925/Z4618
H1a1d2-M3048/Z4409
H1a1d2-Z14502
H1a1d2-Z14514
H1a1d2-Z14523
H1a1d2-Z4370
H1a1d2a-Z5873
H1a1d2b1-Z14447
H1a1d2b1a-Z14454
H1a1d2b2a-Z14463
H1a1d2b2a-Z14487
H1a1d2b3a1-Z14440
H1a1d2b3a1a-Z14414
H1a1d2c1a-Z12552
H1a1d2c1a-Z12556
H1a1d2c1a-Z12564
H1a1d2c1b1-Z12536
H1a1d2c2-Z12609
H1a1d2c2-Z12613
H1a1d2c2-Z12631
H1a1d2c2-Z12637
H1a1d2c2a-Z12592
H1a2-Z14674
H1a2a-Z4471
H1a2a1-Z14729
H1a2a1-Z14732
H1a2a1-Z14734
H1a2a1-Z14742
H1a2a1-Z14764
H1a2a1-Z14773
H1a2a1-Z14775
H1a2a1-Z4425
H1a2a1-Z4441
H1a2a1-Z4445
H1a2a1-Z4446
H1a2a1-Z4448
H1a2a1a-Z14686
H1a2a1a-Z14692
H1b1-Z13977
H1b1-Z13983
H1b1-Z13984
H1b1-Z14007
H1b1-Z14025
H1b1-Z14032
H1b1-Z14033
H1b1-Z14038
H1b1-Z14039
H1b1-Z14040
H1b1-Z14041
H1b1-Z14055
H1b1-Z14066
H1b1-Z14070
H1b1-Z14101
H1b1-Z14103
H1b1-Z14119
H1b1-Z14131
H1b1-Z14139
H1b1-Z14162
H1b1-Z14166
H1b1-Z14180
H1b1-Z14189
H1b1a-P314.1/S220.1
H1b2-Z14267
H1b2-Z14273
H1b2-Z14274
H1b2-Z14284
H1b2-Z14301
H1b2a-Z14309
H1b2a-Z14317
H1b2a-Z14339
H1b2a-Z14348
H1b2a-Z14362
H1b2a-Z14384
H1b2a-Z14390
H1b2a-Z14392
H1b2a-Z14393
H1b2a-Z14397
H3-Z13449
H3-Z13455
H3-Z13467
H3-Z13474
H3-Z13476
H3-Z13499
H3-Z13500
H3-Z13501
H3-Z13504
H3-Z13518
H3-Z13529
H3-Z13533
H3-Z13541
H3-Z13554
H3-Z13579
H3-Z13595
H3-Z13597
H3-Z13598
H3-Z13611
H3-Z13614
H3a-Z13342
H3a-Z13356
H3a-Z13373
H3a-Z13381
H3a-Z13382
H3a-Z13387
H3a-Z13388
H3a-Z13396
H3a-Z13401
H3a-Z13414
H3a-Z13418
H3a-Z13421
H3a-Z13443
H3a-Z13445
H3a-Z16824
H3a1-Z12993
H3a1-Z13043
H3a1-Z13047
H3a1-Z13048
H3a1-Z13049
H3a1-Z13053
H3a1-Z13063
H3a1-Z13076
H3a1-Z13077
H3a1-Z13104
H3a1-Z13123
H3a1-Z13172
H3a1-Z13184
H3a1-Z13185
H3a1-Z13199
H3a2-Z12756
H3a2-Z12775
H3a2-Z12784
H3a2-Z12785
H3a2-Z12787
H3a2a-Z12714
H3a2a-Z12730
H3a2a-Z12746
H3a2a1a-Z16789
H3a2a1a-Z16804
H3a2a2-Z12653
H3a2a2-Z12662
H3a2a2-Z12664
H3a2a2-Z12690
H3a2b-Z12841
H3a2b-Z12852
H3a2b-Z12857
H3a2b-Z12886
H3a2b-Z12890
H3a2b-Z12908
H3a2b-Z12924
H3a2b-Z12933
H3a2b-Z12941
H3a2b-Z12946
H3a2b-Z12980
H3b-Y989.2
H3b-Z13900
H3b-Z13913
H3b-Z13934
H3b1-Z13635
H3b1-Z13637
H3b1-Z13650
H3b1-Z13652
H3b1-Z13669
H3b1-Z13698
H3b1-Z13699
H3b1-Z13739
H3b1-Z13742
H3b1-Z13748
H3b1-Z13757
H3b1-Z13763
H3b1-Z13764
H3b1-Z13790
H3b1-Z13801
H3b1-Z13808
H3b1-Z13817
H3b1-Z13819
H3b1-Z13828
H3b1-Z13829
H3b1-Z13842
H3b1-Z13856
H3b1-Z13870
I-P38
I1-L840
I1-P40
I1a2a1d-L1248
I1a2a2-Z382
I1a2b-PF2805.2/Z2540.2
I1a3a2-S17023
I2a1a1-L160/PF4013/S184
I2a1b-CTS1802/S2638
I2a2a-P220/S119
I2a2a-P222/PF3861/S118/U250
I2a2a1b1-Z2054
I2a2a1c1-L702
I2a2a1c2-Z161
I2a2a1c2a2a1-L1198
I2b-L415/S435
J1a-CTS5368/Z2215
J1a-M365.1
J1a2b1-L92.1
J1a2b1-L93
J2a-L212/PF4988
J2a1b1a-L560
J2b-L282
L1b2-M274
LT-CTS2888/PF5543
LT-CTS4783/PF5548
LT-PF5531
LT-PF5535
LT-PF5566
M1-M106
NO-P192
O-P191
O2-M268
O3a-CTS8153
O3a-F341
O3a2-F525
O3a2c2-F3237
O3a2c2-F871
P-L781/PF5875/YSC0000255
Q1a1-F1215
Q1a1b1a-L713
Q1a1b1a-M365.3
Q1a2b2-L938
Q1a2b2-L941
Q1b-F1537
Q1b-F2894
Q1b-Y1060
Q1b-Y1081
Q1b-Y1108
Q1b-Y1110
Q1b-Y1120
Q1b-Y1134
Q1b-Y1991
Q1b1-F1594
Q1b1-FGC1767/Y2079
Q1b1-FGC1777/Y2020
Q1b1-FGC1810/Y2051
Q1b1-FGC1836/Y2065
Q1b1-FGC1865/Y2088
Q1b1a-FGC1816/Y2125
Q1b1a1a-FGC1934/Y2196
Q1b1b-FGC4620/Y2250
Q1b2-Y1155
Q1b2-Y1173
Q1b2-Y1177
Q1b2-Y1187
Q1b2-Y1239
Q1b2-Y1243
Q1b2-Y1250
R-P224/PF6050
R1-P245/PF6117
R1-P286/PF6136
R1a1-L122/M448/PF6237
R1a1a1-Page7
R1a1a1b1a2a-S205/Z92
R1a1a1b1a3b-S345/Z288
R1a1a1b1a3b1-S201/Z87
R1b1a2-L265/PF6431
R1b1a2-M269
R1b1a2a1a1b-S493/YSC0000053/Z18
R1b1a2a1a1c1a-S497/Z306
R1b1a2a1a1c2b1a1a1-L45/S353
R1b1a2a1a1c2b2-S379/Z10
R1b1a2a1a1c2b2a-S271/Z30
R1b1a2a1a1c2b2a1a-S509/Z31
R1b1a2a1a1c2b2a1a1-Z29
R1b1a2a1a1c2b2a1a1a-S274/Z11
R1b1a2a1a1c2b2a1a1c-M365.4
R1b1a2a1a1c2b2a1a2-CTS10893/S3595
R1b1a2a1a2a1-S227/Z195
R1b1a2a1a2b1a2a-S487/Z35
R1b1a2a1a2c1b1-P66_1
R1b1a2a1a2c1b1-P66_3
R1b1a2a1a2c1d-L144.1/S175
R1b1a2a1a2c1f2a-L226/S168
R1b1a2a1a2c1f2c-S893/Z2185
R1b1a2a1a2c1g1-P314.2/S220.2
R1b1a2a1a2c1g2a-DF25/S253
R1b1a2a1a2c1g4a-S423
R1b1a2a1a2c1g4a1-S3028
R1b1a2a1a2c1i1-L744/S388
R1b1a2a1a2c1i1-L746/S310
R2-M479/PF6107
S-P204
T1a1-L162/Page21
T1a1a-L905

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One comment on “Y-SNP calls for Afontova Gora 2
  1. genetiker says:

    The YFull Q tree makes it clear that the Saqqaq Paleo-Eskimo, and a Peruvian sample and two Vietnamese samples are also Q1a1-F1096.

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