Phenotype SNPs from the Neolithic Aegean

Below are derived allele counts and total numbers of reads for SNPs that have a large effect on phenotype for five genomes from the Neolithic Aegean. Nonzero derived allele counts are in bold. Note that small derived allele counts may be due to DNA damage.

Some of my previous phenotype SNP posts are here:

ASIP, rs2424984, Veddoid brown skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  2/2
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  3/3
Paliambela 7  Greece      Late Neolithic   4,452–4,350  2/2
Kleitos 10    Greece      Final Neolithic  4,230–3,995  3/3

ASIP, rs6058017, Veddoid brown skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  5/5
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  5/5
Kleitos 10  Greece      Final Neolithic  4,230–3,995  1/1

EDAR, rs3827760, Mongoloid teeth, hair, etc.

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/7
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/2

IRF4, rs12203592, light hair and eyes, freckling

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/5
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/8
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

KITLG, rs12821256, blond hair

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/1
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/9
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/5
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

KITLG, rs642742, Veddoid brown skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  1/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/7
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  12/13
Kleitos 10  Greece      Final Neolithic  4,230–3,995  3/3

MC1R, rs1110400, red hair

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/9
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

MC1R, rs11547464, red hair

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/2
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  1/10
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/5

MC1R, rs1805005, blond hair, fair skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/5
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/5

MC1R, rs1805006, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/4

MC1R, rs1805007, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/2

MC1R, rs1805008, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  1/7
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

MC1R, rs1805009, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/2

MCM6, rs182549, ability to digest milk

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/7
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/4

MCM6, rs4988235, ability to digest milk

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/9
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/4
Kleitos 10    Greece      Final Neolithic  4,230–3,995  1/4

OCA2, rs1800407, green or hazel eyes

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/6
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

OCA2, rs1800414, Mongoloid light skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/8
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/6
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/8

OCA2/HERC2, rs12913832, blue eyes

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/12
Paliambela 7  Greece      Late Neolithic   4,452–4,350  1/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  3/4

SLC24A5, rs1426654, Caucasoid light skin

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  5/5
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  7/7
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  10/11
Paliambela 7  Greece      Late Neolithic   4,452–4,350  1/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  4/4

SLC45A2, rs16891982, Caucasoid light skin

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  4/6
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  8/11
Paliambela 7  Greece      Late Neolithic   4,452–4,350  3/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  2/2

TYR, rs1042602, light skin, absence of freckles

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/7
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/10
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  1/2

TYR, rs1393350, blond hair, blue eyes

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/15
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

TYRP1, rs2733831, light hair and eyes

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  9/9
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  3/10
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/3
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One comment on “Phenotype SNPs from the Neolithic Aegean
  1. norah4you says:

    Reblogged this on Norah4you's Weblog and commented:
    Thanks to Genetiker who let me reblogg this. Feel free to comment. Remember that the past is the past. None of us can change it. Only accept that when ever new information in form of facts is placed on the table, old thesis as well as major and minor theories needs to be looked into once more.

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