Phenotype SNPs from the Iberomaurusian culture

Below are derived allele counts and total numbers of reads for SNPs that have a large effect on phenotype for samples associated with the Epipaleolithic Iberomaurusian culture from the Grotte des Pigeons, a cave near the village of Taforalt in eastern Morocco. Nonzero derived allele counts are highlighted. Note that small derived allele counts may be due to DNA damage.

ASIP, rs2424984, Veddoid brown skin

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/1

ASIP, rs6058017, Veddoid brown skin

Sample Period Date BC D/T
TAF013 Epipaleolithic 13,150–11,950 0/1

EDAR, rs3827760, Mongoloid teeth, hair, etc.

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/1
TAF011 Epipaleolithic 13,150–11,950 0/20
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/14
TAF014 Epipaleolithic 13,150–11,950 0/10

IRF4, rs12203592, light hair and eyes, freckling

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 1/12
TAF011 Epipaleolithic 13,150–11,950 0/19
TAF013 Epipaleolithic 13,150–11,950 0/10
TAF014 Epipaleolithic 13,150–11,950 0/18

KITLG, rs12821256, blond hair

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/1
TAF011 Epipaleolithic 13,150–11,950 0/12
TAF013 Epipaleolithic 13,150–11,950 0/9
TAF014 Epipaleolithic 13,150–11,950 0/12

KITLG, rs642742, Veddoid brown skin

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 1/1
TAF013 Epipaleolithic 13,150–11,950 0/1
TAF014 Epipaleolithic 13,150–11,950 0/2

MC1R, rs1110400, red hair

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/15
TAF011 Epipaleolithic 13,150–11,950 0/50
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/57
TAF014 Epipaleolithic 13,150–11,950 0/32

MC1R, rs11547464, red hair

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/8
TAF011 Epipaleolithic 13,150–11,950 0/40
TAF013 Epipaleolithic 13,150–11,950 0/32
TAF014 Epipaleolithic 13,150–11,950 3/20
TAF016 Epipaleolithic 13,006–12,170 1/1

MC1R, rs1805005, blond hair, fair skin

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/2
TAF011 Epipaleolithic 13,150–11,950 0/7
TAF013 Epipaleolithic 13,150–11,950 0/4
TAF014 Epipaleolithic 13,150–11,950 0/7

MC1R, rs1805006, red hair, fair skin

Sample Period Date BC D/T
TAF008 Epipaleolithic 13,150–11,950 0/1
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/11
TAF011 Epipaleolithic 13,150–11,950 0/32
TAF012 Epipaleolithic 12,940–12,099 0/2
TAF013 Epipaleolithic 13,150–11,950 0/29
TAF014 Epipaleolithic 13,150–11,950 0/15

MC1R, rs1805007, red hair, fair skin

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/15
TAF011 Epipaleolithic 13,150–11,950 0/58
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/64
TAF014 Epipaleolithic 13,150–11,950 0/39
TAF016 Epipaleolithic 13,006–12,170 0/1

MC1R, rs1805008, red hair, fair skin

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/8
TAF011 Epipaleolithic 13,150–11,950 0/28
TAF013 Epipaleolithic 13,150–11,950 0/37
TAF014 Epipaleolithic 13,150–11,950 0/18

MC1R, rs1805009, red hair, fair skin

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/24
TAF011 Epipaleolithic 13,150–11,950 0/121
TAF012 Epipaleolithic 12,940–12,099 0/8
TAF013 Epipaleolithic 13,150–11,950 0/90
TAF014 Epipaleolithic 13,150–11,950 0/50
TAF015 Epipaleolithic 13,150–11,950 0/2

MCM6, rs182549, ability to digest milk

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF011 Epipaleolithic 13,150–11,950 0/3
TAF013 Epipaleolithic 13,150–11,950 0/2
TAF014 Epipaleolithic 13,150–11,950 0/3

MCM6, rs4988235, ability to digest milk

Sample Period Date BC D/T
TAF008 Epipaleolithic 13,150–11,950 0/1
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/15
TAF011 Epipaleolithic 13,150–11,950 0/26
TAF013 Epipaleolithic 13,150–11,950 0/48
TAF014 Epipaleolithic 13,150–11,950 0/25

OCA2, rs1800407, green or hazel eyes

Sample Period Date BC D/T
TAF010 Epipaleolithic 13,127–12,182 0/5
TAF011 Epipaleolithic 13,150–11,950 1/9
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/18
TAF014 Epipaleolithic 13,150–11,950 0/13

OCA2, rs1800414, Mongoloid light skin

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/7
TAF011 Epipaleolithic 13,150–11,950 0/11
TAF013 Epipaleolithic 13,150–11,950 0/7
TAF014 Epipaleolithic 13,150–11,950 0/12

OCA2/HERC2, rs12913832, blue eyes

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/4
TAF010 Epipaleolithic 13,127–12,182 0/7
TAF011 Epipaleolithic 13,150–11,950 0/26
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/20
TAF014 Epipaleolithic 13,150–11,950 0/20
TAF015 Epipaleolithic 13,150–11,950 0/1

SLC24A5, rs1426654, Caucasoid light skin

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/1
TAF010 Epipaleolithic 13,127–12,182 0/1
TAF011 Epipaleolithic 13,150–11,950 0/1
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/1
TAF014 Epipaleolithic 13,150–11,950 0/2

SLC45A2, rs16891982, Caucasoid light skin

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/5
TAF010 Epipaleolithic 13,127–12,182 0/18
TAF011 Epipaleolithic 13,150–11,950 0/68
TAF012 Epipaleolithic 12,940–12,099 0/1
TAF013 Epipaleolithic 13,150–11,950 0/61
TAF014 Epipaleolithic 13,150–11,950 0/33

TYR, rs1042602, light skin, absence of freckles

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/2
TAF010 Epipaleolithic 13,127–12,182 0/17
TAF011 Epipaleolithic 13,150–11,950 0/46
TAF012 Epipaleolithic 12,940–12,099 0/2
TAF013 Epipaleolithic 13,150–11,950 0/38
TAF014 Epipaleolithic 13,150–11,950 0/23

TYR, rs1393350, blond hair, blue eyes

Sample Period Date BC D/T
TAF009 Epipaleolithic 12,855–11,958 0/2
TAF010 Epipaleolithic 13,127–12,182 0/18
TAF011 Epipaleolithic 13,150–11,950 0/37
TAF012 Epipaleolithic 12,940–12,099 0/3
TAF013 Epipaleolithic 13,150–11,950 0/37
TAF014 Epipaleolithic 13,150–11,950 0/38
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