Below are genotypes for SNPs that have a large effect on phenotype for 10 genomes from prehistoric Portugal. Genotypes with derived alleles are highlighted.
ASIP, rs2424984, Veddoid brown skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | TT |
LC42 | Middle Neolithic | 4200–3500 | CT |
LC44 | Middle Neolithic | 4200–3500 | TT |
CA122A | Copper Age | 3500–2000 | TT |
CM364 | Copper Age | 3500–2000 | TT |
CM9B | Copper Age | 3500–2000 | TT |
DA96B | Copper Age | 3500–2000 | TT |
MG104 | Middle Bronze Age | 1740–1430 | TT |
TV32032 | Middle Bronze Age | 1740–1430 | TT |
TV3831 | Middle Bronze Age | 1740–1430 | TT |
ASIP, rs6058017, Veddoid brown skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AA |
LC42 | Middle Neolithic | 4200–3500 | GA |
LC44 | Middle Neolithic | 4200–3500 | AA |
CA122A | Copper Age | 3500–2000 | AA |
CM364 | Copper Age | 3500–2000 | AA |
CM9B | Copper Age | 3500–2000 | AA |
DA96B | Copper Age | 3500–2000 | AA |
MG104 | Middle Bronze Age | 1740–1430 | AA |
TV32032 | Middle Bronze Age | 1740–1430 | AA |
TV3831 | Middle Bronze Age | 1740–1430 | AA |
EDAR, rs3827760, Mongoloid teeth, hair, etc.
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AA |
LC42 | Middle Neolithic | 4200–3500 | AA |
LC44 | Middle Neolithic | 4200–3500 | AA |
CA122A | Copper Age | 3500–2000 | AA |
CM364 | Copper Age | 3500–2000 | AA |
CM9B | Copper Age | 3500–2000 | AA |
DA96B | Copper Age | 3500–2000 | AA |
MG104 | Middle Bronze Age | 1740–1430 | AA |
TV32032 | Middle Bronze Age | 1740–1430 | AA |
TV3831 | Middle Bronze Age | 1740–1430 | AA |
IRF4, rs12203592, light hair and eyes, freckling
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
KITLG, rs12821256, blond hair
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | TT |
LC42 | Middle Neolithic | 4200–3500 | TT |
LC44 | Middle Neolithic | 4200–3500 | TT |
CA122A | Copper Age | 3500–2000 | TT |
CM364 | Copper Age | 3500–2000 | TT |
CM9B | Copper Age | 3500–2000 | TT |
DA96B | Copper Age | 3500–2000 | TT |
MG104 | Middle Bronze Age | 1740–1430 | TT |
TV32032 | Middle Bronze Age | 1740–1430 | TT |
TV3831 | Middle Bronze Age | 1740–1430 | TT |
KITLG, rs642742, Veddoid brown skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | TC |
LC42 | Middle Neolithic | 4200–3500 | TC |
LC44 | Middle Neolithic | 4200–3500 | TC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | TC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | TC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
MC1R, rs1110400, red hair
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | TT |
LC42 | Middle Neolithic | 4200–3500 | TT |
LC44 | Middle Neolithic | 4200–3500 | TT |
CA122A | Copper Age | 3500–2000 | TT |
CM364 | Copper Age | 3500–2000 | TT |
CM9B | Copper Age | 3500–2000 | TT |
DA96B | Copper Age | 3500–2000 | TT |
MG104 | Middle Bronze Age | 1740–1430 | TT |
TV32032 | Middle Bronze Age | 1740–1430 | TT |
TV3831 | Middle Bronze Age | 1740–1430 | TT |
MC1R, rs11547464, red hair
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | GG |
LC42 | Middle Neolithic | 4200–3500 | GG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | GG |
DA96B | Copper Age | 3500–2000 | GG |
MG104 | Middle Bronze Age | 1740–1430 | GG |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | GG |
MC1R, rs1805005, blond hair, fair skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | GG |
LC42 | Middle Neolithic | 4200–3500 | TG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | GG |
DA96B | Copper Age | 3500–2000 | GG |
MG104 | Middle Bronze Age | 1740–1430 | GG |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | GG |
MC1R, rs1805006, red hair, fair skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
MC1R, rs1805007, red hair, fair skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
MC1R, rs1805008, red hair, fair skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
MC1R, rs1805009, red hair, fair skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | GG |
LC42 | Middle Neolithic | 4200–3500 | GG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | GG |
DA96B | Copper Age | 3500–2000 | GG |
MG104 | Middle Bronze Age | 1740–1430 | GG |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | GG |
MCM6, rs182549, ability to digest milk
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
MCM6, rs4988235, ability to digest milk
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | GG |
LC42 | Middle Neolithic | 4200–3500 | GG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | GG |
DA96B | Copper Age | 3500–2000 | GG |
MG104 | Middle Bronze Age | 1740–1430 | GG |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | GG |
OCA2, rs1800407, green or hazel eyes
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | CC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
OCA2, rs1800414, Mongoloid light skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | TT |
LC42 | Middle Neolithic | 4200–3500 | TT |
LC44 | Middle Neolithic | 4200–3500 | TT |
CA122A | Copper Age | 3500–2000 | TT |
CM364 | Copper Age | 3500–2000 | TT |
CM9B | Copper Age | 3500–2000 | TT |
DA96B | Copper Age | 3500–2000 | TT |
MG104 | Middle Bronze Age | 1740–1430 | TT |
TV32032 | Middle Bronze Age | 1740–1430 | TT |
TV3831 | Middle Bronze Age | 1740–1430 | TT |
OCA2/HERC2, rs12913832, blue eyes
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AA |
LC42 | Middle Neolithic | 4200–3500 | AA |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | AA |
CM364 | Copper Age | 3500–2000 | AA |
CM9B | Copper Age | 3500–2000 | AA |
DA96B | Copper Age | 3500–2000 | AA |
MG104 | Middle Bronze Age | 1740–1430 | GA |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | AA |
SLC24A5, rs1426654, Caucasoid light skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AA |
LC42 | Middle Neolithic | 4200–3500 | AA |
LC44 | Middle Neolithic | 4200–3500 | AA |
CA122A | Copper Age | 3500–2000 | AA |
CM364 | Copper Age | 3500–2000 | AA |
CM9B | Copper Age | 3500–2000 | AA |
DA96B | Copper Age | 3500–2000 | AA |
MG104 | Middle Bronze Age | 1740–1430 | AA |
TV32032 | Middle Bronze Age | 1740–1430 | AA |
TV3831 | Middle Bronze Age | 1740–1430 | AA |
SLC45A2, rs16891982, Caucasoid light skin
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | CC |
LC42 | Middle Neolithic | 4200–3500 | GC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | GC |
TV32032 | Middle Bronze Age | 1740–1430 | GC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
TYR, rs1042602, light skin, absence of freckles
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AC |
LC42 | Middle Neolithic | 4200–3500 | CC |
LC44 | Middle Neolithic | 4200–3500 | CC |
CA122A | Copper Age | 3500–2000 | CC |
CM364 | Copper Age | 3500–2000 | CC |
CM9B | Copper Age | 3500–2000 | CC |
DA96B | Copper Age | 3500–2000 | CC |
MG104 | Middle Bronze Age | 1740–1430 | CC |
TV32032 | Middle Bronze Age | 1740–1430 | AC |
TV3831 | Middle Bronze Age | 1740–1430 | CC |
TYR, rs1393350, blond hair, blue eyes
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | GG |
LC42 | Middle Neolithic | 4200–3500 | AG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | GG |
DA96B | Copper Age | 3500–2000 | GG |
MG104 | Middle Bronze Age | 1740–1430 | GG |
TV32032 | Middle Bronze Age | 1740–1430 | GG |
TV3831 | Middle Bronze Age | 1740–1430 | AG |
TYRP1, rs2733831, light hair and eyes
Sample | Period | Date BC | GT |
LC41 | Middle Neolithic | 4200–3500 | AA |
LC42 | Middle Neolithic | 4200–3500 | GG |
LC44 | Middle Neolithic | 4200–3500 | GG |
CA122A | Copper Age | 3500–2000 | GG |
CM364 | Copper Age | 3500–2000 | GG |
CM9B | Copper Age | 3500–2000 | AG |
DA96B | Copper Age | 3500–2000 | AG |
MG104 | Middle Bronze Age | 1740–1430 | AA |
TV32032 | Middle Bronze Age | 1740–1430 | AA |
TV3831 | Middle Bronze Age | 1740–1430 | AG |
Can you look also on the y snp calls from portugal?
I will if and when aligned data becomes available.
Hello Genetiker
Did you during your analysis created .bam files from those fastq which were published on ENA? If so, could you upload them to google drive? I want to convert them to Gedmatch and give people possibility to compare with them.
Did you during your analysis created .bam files from those fastq which were published on ENA?
No.