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Phenotype SNPs from Copper and Bronze Age Spain

Posted on September 28, 2015 by Genetiker — 2 Comments

Below are derived allele counts and total numbers of reads for SNPs that have a large effect on phenotype for the samples from El Portalón cave in the Atapuerca Mountains of Spain. Nonzero derived allele counts are in bold. Note that small derived allele counts may be due to DNA damage.

A couple of my previous posts containing genotypes for these SNPs for other prehistoric samples are here and here.

ASIP, rs2424984, Veddoid brown skin

ATP2   5/5
ATP12  2/2
ATP16  1/1

ASIP, rs6058017, Veddoid brown skin

ATP2   2/2
ATP9   1/1
ATP12  1/1

EDAR, rs3827760, Mongoloid teeth, hair, etc.

ATP2   0/7
ATP7   0/1
ATP9   0/1
ATP12  0/1
ATP16  0/2

IRF4, rs12203592, light hair and eyes, freckling

ATP2   0/6
ATP9   0/1
ATP12  0/1
ATP16  0/2

KITLG, rs12821256, blond hair

ATP2   0/6
ATP9   0/1
ATP12  0/2
ATP16  0/1

KITLG, rs642742, Veddoid brown skin

ATP2   2/4
ATP12  1/3
ATP16  4/4

MC1R, rs1110400, red hair

ATP2   0/5
ATP9   0/2
ATP16  0/3

MC1R, rs11547464, red hair

ATP2   0/5
ATP9   0/2
ATP16  0/3

MC1R, rs1805005, blond hair, fair skin

ATP2   0/4
ATP12  0/2
ATP16  0/1

MC1R, rs1805006, red hair, fair skin

ATP2   0/6
ATP12  0/1
ATP16  0/1

MC1R, rs1805007, red hair, fair skin

ATP2   1/7
ATP9   0/2
ATP16  0/3

MC1R, rs1805008, red hair, fair skin

ATP2   0/4
ATP9   0/2
ATP16  0/3

MC1R, rs1805009, red hair, fair skin

ATP2   0/5
ATP12  0/4

MCM6, rs182549, ability to digest milk

ATP2   0/5
ATP7   0/1
ATP12  0/3
ATP16  0/1

MCM6, rs4988235, ability to digest milk

ATP2   0/10
ATP12  0/1
ATP16  1/4

OCA2, rs1800407, green or hazel eyes

ATP2   0/6
ATP12  0/2
ATP16  0/1

OCA2, rs1800414, Mongoloid light skin

ATP2   0/9
ATP12  0/1
ATP16  0/1

OCA2/HERC2, rs12913832, blue eyes

ATP2   4/6
ATP12  0/5
ATP16  0/3

SLC24A5, rs1426654, Caucasoid light skin

ATP2   7/7
ATP9   1/1
ATP12  3/3

SLC45A2, rs16891982, Caucasoid light skin

ATP2   0/7
ATP9   1/2
ATP12  0/1
ATP16  1/3

TYR, rs1042602, light skin, absence of freckles

ATP2   1/4
ATP9   0/1
ATP12  0/1
ATP16  0/2

TYR, rs1393350, blond hair, blue eyes

ATP2   1/9
ATP12  0/2
ATP16  0/3

TYRP1, rs2733831, light hair and eyes

ATP2   3/5
ATP12  2/2
ATP16  0/2
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2 comments on “Phenotype SNPs from Copper and Bronze Age Spain”
  1. More phenotype SNPs from prehistoric Eurasia | Genetiker says:
    December 1, 2015 at 2:25 am

    […] My previous post giving genotypes for 102 other prehistoric Eurasian samples is here, and my post giving genotypes for eight other Copper and Bronze Age Iberian samples is here. […]

    Reply
  2. Phenotype SNPs from Ice Age Europe | Genetiker says:
    May 5, 2016 at 4:12 am

    […] Phenotype SNPs from Copper and Bronze Age Spain […]

    Reply

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